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anthill_sri001 [2019/05/25 23:56] tmatejukanthill_sri001 [2023/08/01 01:08] (current) – external edit 127.0.0.1
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-FIXME TODO UNDERCONSTRUCTION +==== description ====
- +
-==== software ==== +
 CD-HIT is a fast program for clustering and comparing large sets of protein or nucleotide sequences. Accelerated for clustering the next generation sequencing data. Software page : [[http://cd-hit.org]] . CD-HIT is a fast program for clustering and comparing large sets of protein or nucleotide sequences. Accelerated for clustering the next generation sequencing data. Software page : [[http://cd-hit.org]] .
  
 ==== software version ==== ==== software version ====
- 
 CD-HIT , from Ubuntu 18.04 repo (CD-HIT version 4.7 (built on Jul  1 2017)) .  CD-HIT , from Ubuntu 18.04 repo (CD-HIT version 4.7 (built on Jul  1 2017)) . 
  
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 *) ant6nn = ant602 and ant604, ant00n = ant007 and ant008 \\ *) ant6nn = ant602 and ant604, ant00n = ant007 and ant008 \\
 *) efficiency as ''t1 / ( cores * tn )'' ( where t1 is computation time at one core, tn is computation time on N cores ) \\ *) efficiency as ''t1 / ( cores * tn )'' ( where t1 is computation time at one core, tn is computation time on N cores ) \\
 +*) command run ''cdhit -i ${FASTAFILE} -o out -c 0.9 -n 5 -T ${SLURM_NPROCS} -M 14000'' on file ''uniprot_sprot.fasta (md5sum: 28930f98b76a8475b1d4f8291f2a5833)''
  
anthill_sri001.1558821408.txt.gz · Last modified: 2023/08/01 06:38 (external edit)