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anthill_sri015 [2020/05/27 00:06] tmatejukanthill_sri015 [2023/08/01 01:08] (current) – external edit 127.0.0.1
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 ==== sbatch example ==== ==== sbatch example ====
-Whith this sbatch file you can use anthill's computing node to download ''SRR390728' with prefetch and ascp transport protocol.+Whith this sbatch file you can use anthill's computing node to download ''SRR390728'' with prefetch and ascp as transport protocol.
   #!/bin/bash -l   #!/bin/bash -l
   #SBATCH --partition=short   #SBATCH --partition=short
   #SBATCH --ntasks=1   #SBATCH --ntasks=1
-  #SBATCH --mem 4G+  #SBATCH --mem 3G
   #SBATCH --job-name SRR390728   #SBATCH --job-name SRR390728
      
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   FILENAME="SRR390728"   FILENAME="SRR390728"
 +  
   echo "date: `date -R`"   echo "date: `date -R`"
   echo "host: `hostname`"   echo "host: `hostname`"
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 Please remember to not to overuse Internet connections of CeNT or NCBI when downloading files. Do not start dozens of download processes at once, this will stress Internet connections both of CeNT and NCBI. Be aware that some organizations recognize massive download as DOS attack and will block access (temporary or permanently) to its resources. Please remember to not to overuse Internet connections of CeNT or NCBI when downloading files. Do not start dozens of download processes at once, this will stress Internet connections both of CeNT and NCBI. Be aware that some organizations recognize massive download as DOS attack and will block access (temporary or permanently) to its resources.
  
-  --- \\ + 
-*) [https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=toolkit_doc&f=prefetch\\ +*) https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=toolkit_doc&f=prefetch \\ 
-*) [http://download.asperasoft.com/download/docs/cli/3.9.6/user_linux/pdf2/Aspera_CLI_Admin_3.9.6_Linux.pdf\\ +*) http://download.asperasoft.com/download/docs/cli/3.9.6/user_linux/pdf2/Aspera_CLI_Admin_3.9.6_Linux.pdf \\ 
-*) [https://www.ncbi.nlm.nih.gov/\\+*) https://www.ncbi.nlm.nih.gov/ \\
  
anthill_sri015.1590530808.txt.gz · Last modified: 2023/08/01 06:38 (external edit)