anthill_sri016
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| Both sides previous revisionPrevious revisionNext revision | Previous revision | ||
| anthill_sri016 [2020/12/02 19:14] – tmatejuk | anthill_sri016 [2023/08/01 01:08] (current) – external edit 127.0.0.1 | ||
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| Line 1: | Line 1: | ||
| ==== description ==== | ==== description ==== | ||
| - | AdapterRemoval searches for and removes adapter sequences from High-Throughput Sequencing (HTS) data and (optionally) trims low quality bases from the 3' end of reads following adapter removal. Software page : [[https:// | + | AdapterRemoval searches for and removes adapter sequences from High-Throughput Sequencing (HTS) data and (optionally) trims low quality bases from the 3' end of reads following adapter removal. Software page : [[https:// |
| ==== software version ==== | ==== software version ==== | ||
| Bellow description covers AdapterRemoval version 2.3.1 . | Bellow description covers AdapterRemoval version 2.3.1 . | ||
| - | |||
| - | https:// | ||
| ==== prepare software ==== | ==== prepare software ==== | ||
| Line 20: | Line 18: | ||
| make -j${SLURM_NPROCS} | make -j${SLURM_NPROCS} | ||
| | | ||
| - | #read output | + | #read output, compitation will end with message |
| + | # Linking executable build/ | ||
| + | #exit interactive mode when finished | ||
| exit | exit | ||
| ==== sbatch example ==== | ==== sbatch example ==== | ||
| - | This description assumes that above step ( prepare software ) were done beforehand. | + | This description assumes that above step ( prepare software ) were done beforehand. \\ |
| + | Bellow slurm job creates temporary folder in your home folder (like '' | ||
| - | File '' | + | File '' |
| < | < | ||
| Line 47: | Line 48: | ||
| #use AdapterRemoval software | #use AdapterRemoval software | ||
| AdapterRemoval --file1 090413_I352_FC31307AAXX_L6_SORssqRADDHAAPE_1.fq.gz --qualitybase 64 | AdapterRemoval --file1 090413_I352_FC31307AAXX_L6_SORssqRADDHAAPE_1.fq.gz --qualitybase 64 | ||
| + | |||
| </ | </ | ||
anthill_sri016.1606932850.txt.gz · Last modified: 2023/08/01 06:38 (external edit)
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