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| Both sides previous revisionPrevious revisionNext revision | Previous revision | ||
| anthill_sri016 [2020/12/02 19:17] – tmatejuk | anthill_sri016 [2023/08/01 01:08] (current) – external edit 127.0.0.1 | ||
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| ==== description ==== | ==== description ==== | ||
| - | AdapterRemoval searches for and removes adapter sequences from High-Throughput Sequencing (HTS) data and (optionally) trims low quality bases from the 3' end of reads following adapter removal. Software page : [[https:// | + | AdapterRemoval searches for and removes adapter sequences from High-Throughput Sequencing (HTS) data and (optionally) trims low quality bases from the 3' end of reads following adapter removal. Software page : [[https:// |
| ==== software version ==== | ==== software version ==== | ||
| Bellow description covers AdapterRemoval version 2.3.1 . | Bellow description covers AdapterRemoval version 2.3.1 . | ||
| - | |||
| - | https:// | ||
| ==== prepare software ==== | ==== prepare software ==== | ||
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| ==== sbatch example ==== | ==== sbatch example ==== | ||
| - | This description assumes that above step ( prepare software ) were done beforehand. | + | This description assumes that above step ( prepare software ) were done beforehand. \\ |
| + | Bellow slurm job creates temporary folder in your home folder (like '' | ||
| File '' | File '' | ||
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| #use AdapterRemoval software | #use AdapterRemoval software | ||
| AdapterRemoval --file1 090413_I352_FC31307AAXX_L6_SORssqRADDHAAPE_1.fq.gz --qualitybase 64 | AdapterRemoval --file1 090413_I352_FC31307AAXX_L6_SORssqRADDHAAPE_1.fq.gz --qualitybase 64 | ||
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| </ | </ | ||