User Tools

Differences

This shows you the differences between two versions of the page.

Link to this comparison view

Both sides previous revisionPrevious revision
Next revision		Previous revision
anthill_sri018 [2023/11/05 08:19] – tmatejukanthill_sri018 [2023/11/07 07:33] (current) – tmatejuk
Line 9: Line 9:
  
 ==== software version ==== ==== software version ====
-Bellow description covers preparation and compilation of GLIMPSE2_phase v2.0.0 . +Bellow description covers preparation and compilation of GLIMPSE2_phase v2.0.0 ((Software is available as static binaries, see https://odelaneau.github.io/GLIMPSE/docs/installation/static_binaries))
- +
- +
-1) Software is available as static binaries [[https://odelaneau.github.io/GLIMPSE/docs/installation/static_binaries|more]].+
  
  
Line 27: Line 24:
   wget https://boostorg.jfrog.io/artifactory/main/release/1.73.0/source/boost_1_73_0.tar.bz2   wget https://boostorg.jfrog.io/artifactory/main/release/1.73.0/source/boost_1_73_0.tar.bz2
   tar --bzip2 -xf boost_1_73_0.tar.bz2   tar --bzip2 -xf boost_1_73_0.tar.bz2
 +  
   cd ~/anthill23_soft/glimpse   cd ~/anthill23_soft/glimpse
   git clone https://github.com/odelaneau/glimpse.git   git clone https://github.com/odelaneau/glimpse.git
Line 40: Line 37:
   cd ~/anthill23_soft/glimpse/htslib_src   cd ~/anthill23_soft/glimpse/htslib_src
   autoreconf -i   autoreconf -i
-  ./configure --prefix=/home/users/${USER}/anthill23_soft/glimpse/htslib+  ./configure --enable-libcurl --prefix=/home/users/${USER}/anthill23_soft/glimpse/htslib
   make   make
   make install   make install
Line 59: Line 56:
   sed -i 's/desktop: BOOST_LIB_PO.*/desktop: BOOST_LIB_PO=\/home\/users\/${USER}\/anthill23_soft\/glimpse\/boost\/lib\/libboost_program_options.a/' makefile   sed -i 's/desktop: BOOST_LIB_PO.*/desktop: BOOST_LIB_PO=\/home\/users\/${USER}\/anthill23_soft\/glimpse\/boost\/lib\/libboost_program_options.a/' makefile
   sed -i 's/desktop: BOOST_LIB_SE.*/desktop: BOOST_LIB_SE=\/home\/users\/${USER}\/anthill23_soft\/glimpse\/boost\/lib\/libboost_serialization.a/' makefile   sed -i 's/desktop: BOOST_LIB_SE.*/desktop: BOOST_LIB_SE=\/home\/users\/${USER}\/anthill23_soft\/glimpse\/boost\/lib\/libboost_serialization.a/' makefile
-  make all +  make desktop
- +
-  #read output+
      
 +compile GLIMPSE2_chunk / ligate / split_reference 
 +  #repeat the same as for GLIMPSE2_phase described above, but in different folder
 +  cd ~/anthill23_soft/glimpse/glimpse/chunk           # for GLIMPSE2_chunk
 +  cd ~/anthill23_soft/glimpse/glimpse/ligate          # for GLIMPSE2_ligate
 +  cd ~/anthill23_soft/glimpse/glimpse/split_reference # for GLIMPSE2_split_reference
 + 
 test created binary, you should get similar output : test created binary, you should get similar output :
   cd ~/anthill23_soft/glimpse/glimpse/phase   cd ~/anthill23_soft/glimpse/glimpse/phase

This website uses cookies. By using the website, you agree with storing cookies on your computer. Also, you acknowledge that you have read and understand our Privacy Policy. If you do not agree, please leave the website.

More information