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anthill_sri018 [2023/11/05 08:19] – tmatejukanthill_sri018 [2023/11/07 07:33] (current) – tmatejuk
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 ==== software version ==== ==== software version ====
-Bellow description covers preparation and compilation of GLIMPSE2_phase v2.0.0 . +Bellow description covers preparation and compilation of GLIMPSE2_phase v2.0.0 ((Software is available as static binaries, see https://odelaneau.github.io/GLIMPSE/docs/installation/static_binaries))
- +
- +
-1) Software is available as static binaries [[https://odelaneau.github.io/GLIMPSE/docs/installation/static_binaries|more]].+
  
  
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   wget https://boostorg.jfrog.io/artifactory/main/release/1.73.0/source/boost_1_73_0.tar.bz2   wget https://boostorg.jfrog.io/artifactory/main/release/1.73.0/source/boost_1_73_0.tar.bz2
   tar --bzip2 -xf boost_1_73_0.tar.bz2   tar --bzip2 -xf boost_1_73_0.tar.bz2
 +  
   cd ~/anthill23_soft/glimpse   cd ~/anthill23_soft/glimpse
   git clone https://github.com/odelaneau/glimpse.git   git clone https://github.com/odelaneau/glimpse.git
Line 40: Line 37:
   cd ~/anthill23_soft/glimpse/htslib_src   cd ~/anthill23_soft/glimpse/htslib_src
   autoreconf -i   autoreconf -i
-  ./configure --prefix=/home/users/${USER}/anthill23_soft/glimpse/htslib+  ./configure --enable-libcurl --prefix=/home/users/${USER}/anthill23_soft/glimpse/htslib
   make   make
   make install   make install
Line 59: Line 56:
   sed -i 's/desktop: BOOST_LIB_PO.*/desktop: BOOST_LIB_PO=\/home\/users\/${USER}\/anthill23_soft\/glimpse\/boost\/lib\/libboost_program_options.a/' makefile   sed -i 's/desktop: BOOST_LIB_PO.*/desktop: BOOST_LIB_PO=\/home\/users\/${USER}\/anthill23_soft\/glimpse\/boost\/lib\/libboost_program_options.a/' makefile
   sed -i 's/desktop: BOOST_LIB_SE.*/desktop: BOOST_LIB_SE=\/home\/users\/${USER}\/anthill23_soft\/glimpse\/boost\/lib\/libboost_serialization.a/' makefile   sed -i 's/desktop: BOOST_LIB_SE.*/desktop: BOOST_LIB_SE=\/home\/users\/${USER}\/anthill23_soft\/glimpse\/boost\/lib\/libboost_serialization.a/' makefile
-  make all +  make desktop
- +
-  #read output+
      
 +compile GLIMPSE2_chunk / ligate / split_reference 
 +  #repeat the same as for GLIMPSE2_phase described above, but in different folder
 +  cd ~/anthill23_soft/glimpse/glimpse/chunk           # for GLIMPSE2_chunk
 +  cd ~/anthill23_soft/glimpse/glimpse/ligate          # for GLIMPSE2_ligate
 +  cd ~/anthill23_soft/glimpse/glimpse/split_reference # for GLIMPSE2_split_reference
 + 
 test created binary, you should get similar output : test created binary, you should get similar output :
   cd ~/anthill23_soft/glimpse/glimpse/phase   cd ~/anthill23_soft/glimpse/glimpse/phase
anthill_sri018.1699168790.txt.gz · Last modified: 2023/11/05 08:19 by tmatejuk

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