https://crwiki.cent.uw.edu.pl/ 2026-04-25T01:42:57+00:00 https://crwiki.cent.uw.edu.pl/ https://crwiki.cent.uw.edu.pl/lib/exe/fetch.php?media=wiki:logo.png text/html 2025-10-19T21:41:39+00:00 Anonymous (anonymous@undisclosed.example.com) https://crwiki.cent.uw.edu.pl/doku.php?id=mrowisko:anthill_desc_v04&rev=1760910099&do=diff Mrowisko / Anthill ver 0.4 Hardware Software ---------- ---------- ---------- Before sending request to install new software on computing nodes : * use slurm interactive session and look for it on computing node * if it is not installed yet, but is is not available in standard repositories consider text/html 2026-02-27T06:21:24+00:00 Anonymous (anonymous@undisclosed.example.com) https://crwiki.cent.uw.edu.pl/doku.php?id=mrowisko:anthill_hardware_v04&rev=1772173284&do=diff back to : Mrowisko / Anthill ver 0.4 hardware (new) Node with CPU : 1x AMD Ryzen Threadripper PRO 9965WX 24-Cores node name(s) CPU RAM GPU /tmp /tmp2 network node200 24 512 GB 2x NVIDIA RTX PRO 4500 Blackwell ~ 1.6 TB (ssd) - 10 Gbps text/html 2025-10-24T12:03:11+00:00 Anonymous (anonymous@undisclosed.example.com) https://crwiki.cent.uw.edu.pl/doku.php?id=mrowisko:anthill_soft_v04&rev=1761307391&do=diff back to : Mrowisko / Anthill ver 0.4 Mrowisko / software Available on nodes : OS * based on debian 13 SLURM * slurm 24.11.4 GCC * 14.2.0 clang * 19.1.7 python * 3.13 apptainer * 1.4.3 CUDA * Nvidia K20m * Compute Capability : 3.5 * Driver Version : 470 text/html 2025-10-24T08:16:21+00:00 Anonymous (anonymous@undisclosed.example.com) https://crwiki.cent.uw.edu.pl/doku.php?id=mrowisko:snote001&rev=1761293781&do=diff back to : Mrowisko / Anthill ver 0.4 nextflow Nextflow is a workflow system for creating scalable, portable, and reproducible workflows. Documentation page : <https://www.nextflow.io/docs/latest/> Training / workshop : <https://training.nextflow.io/2.1.3/hello_nextflow/01_hello_world/> Nextflow in version 22.12 removed DSL1 (more). To install nextflow with DSL1 support see install Nextflow with DSL1. install nextflow text/html 2025-10-21T04:13:31+00:00 Anonymous (anonymous@undisclosed.example.com) https://crwiki.cent.uw.edu.pl/doku.php?id=mrowisko:snote002&rev=1761020011&do=diff back to : Mrowisko / Anthill ver 0.4 apptainer Apptainer (formerly Singularity) simplifies the creation and execution of containers, ensuring software components are encapsulated for portability and reproducibility. Doc : <https://apptainer.org/documentation/> test Simple example to test apptainer. Runs Appine container and extracts information within its files ( text/html 2025-10-20T08:06:52+00:00 Anonymous (anonymous@undisclosed.example.com) https://crwiki.cent.uw.edu.pl/doku.php?id=mrowisko:snote003&rev=1760947612&do=diff back to : Mrowisko / Anthill ver 0.4 nextflow (with DSL1) Nextflow is a workflow system for creating scalable, portable, and reproducible workflows. Nextflow DSL support change : * In Nextflow version 22.03.0-edge, DSL2 became the default DSL version. * In version 22.12.0-edge, DSL1 support was removed.