CRwiki - mrowisko

anthill_desc_v04

Anonymous (anonymous@undisclosed.example.com) — 2025-10-19T21:41:39+00:00

Mrowisko / Anthill ver 0.4 Hardware Software ---------- ---------- ---------- Before sending request to install new software on computing nodes : * use slurm interactive session and look for it on computing node * if it is not installed yet, but is is not available in standard repositories consider

anthill_hardware_v04

Anonymous (anonymous@undisclosed.example.com) — 2026-02-27T06:21:24+00:00

back to : Mrowisko / Anthill ver 0.4 hardware (new) Node with CPU : 1x AMD Ryzen Threadripper PRO 9965WX 24-Cores node name(s) CPU RAM GPU /tmp /tmp2 network node200 24 512 GB 2x NVIDIA RTX PRO 4500 Blackwell ~ 1.6 TB (ssd) - 10 Gbps

anthill_soft_v04

Anonymous (anonymous@undisclosed.example.com) — 2026-04-28T07:02:18+00:00

back to : Mrowisko / Anthill ver 0.4 Mrowisko / software Available on nodes : OS * based on debian 13 SLURM * slurm 24.11.4 GCC * 14.2.0 clang * 19.1.7 python * 3.13 apptainer * 1.4.3 CUDA * NVIDIA RTX PRO 4500 Blackwell * Compute Capability : 12

anthill_software_other_v04

Anonymous (anonymous@undisclosed.example.com) — 2026-04-28T21:21:59+00:00

back to : Mrowisko / Anthill ver 0.4 installing from source In case the software that you want to use on Anthill cluster is not available, it is possible that you may prepare it independently for your needs ( download, compile, etc. ). Bellow there are some examples how to do this in case of some well known software:

here

Anonymous (anonymous@undisclosed.example.com) — 2026-04-28T21:58:12+00:00

back to : Mrowisko / Anthill ver 0.4 install GROMACS Bellow instructions allow you to install GROMACS Open interactive session srun -N1 -c4 --mem=200GB --gres=gpu:1 --pty bash -l Create new folder for gromacs softare and download source mkdir -p ~/soft_gromacs cd ~/soft_gromacs wget https://ftp.gromacs.org/gromacs/gromacs-2026.1.tar.gz tar xzf gromacs-2026.1.tar.gz

snote001

Anonymous (anonymous@undisclosed.example.com) — 2025-10-24T08:16:21+00:00

back to : Mrowisko / Anthill ver 0.4 nextflow Nextflow is a workflow system for creating scalable, portable, and reproducible workflows. Documentation page : Training / workshop : Nextflow in version 22.12 removed DSL1 (more). To install nextflow with DSL1 support see install Nextflow with DSL1. install nextflow

snote002

Anonymous (anonymous@undisclosed.example.com) — 2025-10-21T04:13:31+00:00

back to : Mrowisko / Anthill ver 0.4 apptainer Apptainer (formerly Singularity) simplifies the creation and execution of containers, ensuring software components are encapsulated for portability and reproducibility. Doc : test Simple example to test apptainer. Runs Appine container and extracts information within its files (

snote003

Anonymous (anonymous@undisclosed.example.com) — 2025-10-20T08:06:52+00:00

back to : Mrowisko / Anthill ver 0.4 nextflow (with DSL1) Nextflow is a workflow system for creating scalable, portable, and reproducible workflows. Nextflow DSL support change : * In Nextflow version 22.03.0-edge, DSL2 became the default DSL version. * In version 22.12.0-edge, DSL1 support was removed.