CRwiki

Hardware

Software

Before sending request to install new software on computing nodes :

• use slurm interactive session and check ( it is probably already installed )
• if it is not installed yet, but is is not available in standard repositories consider installing it from source in user space. You can find some examples how to do it bellow.
• if you are not familiar with compiling software, feel free to ask
• if you are not familiar with distributed computing and need help with computing job optimalization, also feel free to ask

Software related issues ( how to compile, how to use, benchmark, … ) :

software CD-HIT, performance tests, more...
software rMATS, performance tests, more...
software STAR, performance tests, more...
massive ftp downloads with cluster, more...
sra-toolkit ( prefetch with ascp ), more...
software AdapterRemoval, how to install and use, more...
software preseq, how to install and use, more...
software GLIMPSE2, how to install, more...